Biology
Our faculty are interested in a wide range of organisms and research areas. They have received funding from the John Templeton Foundation, the National Institutes of Health, the National Science Foundation, and other prestigious funding agencies and foundations.
Areas of Research include:
- Animal behavior
- Bioinformatics
- Cell biology
- Development
- Ecology
- Evolution
- Genetics
- Marine biology
- Molecular biology
- Molecular evolution/systematics
- Neuroscience
- Physiology
- Population biology
- Signal Transduction
Submissions from 2016
Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities, László G. Nagy, Robert Riley, Andrew Tritt, Catherine Adam, Chris Daum, Dimitrios Floudas, Hui Sun, Jagjit S. Yadav, Jasmyn Pangilinan, Karl Henrik Larsson, Kenji Matsuura, Kerrie Barry, Kurt Labutti, Rita Kuo, Robin A. Ohm, Sukanta S. Bhattacharya, Takashi Shirouzu, Yuko Yoshinaga, Francis M. Martin, Igor V. Grigoriev, and David S. Hibbett
Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks, Kade P. Pettie, Jacqueline M. Dresch, and Robert A. Drewell
Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation, Emily J. Remnant, Alyson Ashe, Paul E. Young, Gabriele Buchmann, Madeleine Beekman, Michael H. Allsopp, Catherine M. Suter, Robert A. Drewell, and Benjamin P. Oldroyd
Supplemental material for Reich 2016, Deborah Robertson, Hannah G. Reich, and Gretchen Goodbody-Gringley
Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo, Rupinder Sayal, Jacqueline M. Dresch, Irina Pushel, Benjamin R. Taylor, and David N. Arnosti
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors, Firoz Shah, César Nicolás, Johan Bentzer, Magnus Ellström, Mark Smits, Francois Rineau, Björn Canbäck, Dimitrios Floudas, Robert Carleer, Gerald Lackner, Jana Braesel, Dirk Hoffmeister, Bernard Henrissat, Dag Ahrén, Tomas Johansson, David S. Hibbett, Francis Martin, Per Persson, and Anders Tunlid
Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron, Jill A. Sohm, Nathan A. Ahlgren, Zachary J. Thomson, Cheryl Williams, James W. Moffett, Mak A. Saito, Eric A. Webb, and Gabrielle Rocap
Submissions from 2015
Hindlimb muscle anatomical mechanical advantage differs among joints and stride phases in basilisk lizards, Philip J. Bergmann and Meredith Hare-Drubka
The Wisdom of Crowds: Can Mathematical Models Crack the cis Regulatory Code?, Jacqueline M. Dresch and David N. Arnosti
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii, Dimitrios Floudas, Benjamin W. Held, Robert Riley, Laszlo G. Nagy, Gage Koehler, Anthony S. Ransdell, Hina Younus, Julianna Chow, Jennifer Chiniquy, Anna Lipzen, Andrew Tritt, Hui Sun, Sajeet Haridas, Kurt LaButti, Robin A. Ohm, Ursula Kües, Robert A. Blanchette, Igor V. Grigoriev, Robert E. Minto, and David S. Hibbett
Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling, Dimitrios Floudas and David S. Hibbett
Molecular Evolution of Nitrogen Assimilatory Enzymes in Marine Prasinophytes, Sohini Ghoshroy and Deborah L. Robertson
Evolutionary relationships of Heimioporus and Boletellus (Boletales), with an emphasis on Australian taxa including new species and new combinations in Aureoboletus, Hemileccinum and Xerocomus, Roy E. Halling, Nigel Fechner, Mitchell Nuhn, Todd Osmundson, Kasem Soytong, David Arora, Manfred Binder, and David Hibbett
Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms, Joshua R. Herr, Maarja Öpik, and David S. Hibbett
Synthesis of phylogeny and taxonomy into a comprehensive tree of life, Cody E. Hinchliff, Stephen A. Smith, James F. Allman, J. Gordon Burleigh, Ruchi Chaudhary, Lyndon M. Coghill, Keith A. Crandall, Jiabin Deng, Bryan T. Drew, Romina Gazis, Karl Gude, David S. Hibbett, Laura A. Katz, H. Dail Laughinghouse, Emily Jane McTavish, Peter E. Midford, Christopher L. Owen, Richard H. Ree, Jonathan A. Rees, Douglas E. Soltisc, Tiffani Williams, and Karen A. Cranston
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists, Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, Francois Buscot, Björn Canbäck, Cindy Choi, Nicolas Cichocki, Alicia Clum, Jan Colpaert, Alex Copeland, Mauricio D. Costa, Jeanne Doré, Dimitrios Floudas, Gilles Gay, Mariangela Girlanda, Bernard Henrissat, Sylvie Herrmann, Jaqueline Hess, Nils Högberg, Tomas Johansson, Hassine Radhouane Khouja, Kurt Labutti, Urs Lahrmann, Anthony Levasseur, Erika A. Lindquist, Anna Lipzen, Roland Marmeisse, Elena Martino, Claude Murat, Chew Y. Ngan, and David Hibbett
Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea, Rachael Martin, Romina Gazis, Demetra Skaltsas, Priscila Chaverri, and David Hibbett
Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos, Gregory D. McCarthy, Robert A. Drewell, and Jacqueline M. Dresch
Phylogenetic relationships and morphological evolution in Lentinus, Polyporellus and Neofavolus, emphasizing southeastern Asian taxa, Jaya Seelan Sathiya Seelan, Alfredo Justo, Laszlo G. Nagy, Edward A. Grand, Scott A. Redhead, and David Hibbett
Degradation of bunker C fuel oil by white-rot fungi in sawdust cultures suggests potential applications in bioremediation, Darcy Young, James Rice, Rachael Martin, Erika Lindquist, Anna Lipzen, Igor Grigoriev, and David Hibbett
MARZ: An algorithm to combinatorially analyze gapped n-mer models of transcription factor binding, Rowan G. Zellers, Robert A. Drewell, and Jacqueline M. Dresch
Submissions from 2014
The unique trace metal and mixed layer conditions of the costa rica upwelling dome support a distinct and dense community of Synechococcus, Nathan A. Ahlgren, Abigail Noble, Allison P. Patton, Kathryn Roache-Johnson, Laurel Jackson, Daniela Robinson, Cedar McKay, Lisa R. Moore, Mak A. Saito, and Gabrielle Rocap
Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis), Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, and Robert A. Drewell
Many-to-Many Mapping of Phenotype to Performance: An Extension of the F-Matrix for Studying Functional Complexity, Philip J. Bergmann and Eric J. McElroy
Species delimitation in Trametes: A comparison of ITS, RPB1, RPB2 and TEF1 gene phylogenies, Alexis Carlson, Alfredo Justo, and David S. Hibbett
The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera, Robert A. Drewell, Eliot C. Bush, Emily J. Remnant, Garrett T. Wong, Suzannah M. Beeler, Jessica L. Stringham, Julianne Lim, and Benjamin P. Oldroyd
Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer, Robert A. Drewell, Michael J. Nevarez, Jessica S. Kurata, Lauren N. Winkler, Lily Li, and Jacqueline M. Dresch
Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species, Alfredo Justo, Ekaterina Malysheva, Tatiana Bulyonkova, Else C. Vellinga, Gerry Cobian, Nhu Nguyen, Andrew M. Minnis, and David S. Hibbett
Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts, László G. Nagy, Robin A. Ohm, Gábor M. Kovács, Dimitrios Floudas, Robert Riley, Attila Gácser, Mátyás Sipiczki, John M. Davis, Sharon L. Doty, G. Sybren De Hoog, B. Franz Lang, Joseph W. Spatafora, Francis M. Martin, Igor V. Grigoriev, and David S. Hibbett
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi, Robert Riley, Asaf A. Salamov, Daren W. Brown, Laszlo G. Nagy, Dimitrios Floudas, Benjamin W. Held, Anthony Levasseur, Vincent Lombard, Emmanuelle Morin, Robert Otillar, Erika A. Lindquist, Hui Sun, Kurt M. LaButti, Jeremy Schmutz, Dina Jabbour, Hong Luo, Scott E. Baker, Antonio G. Pisabarro, Jonathan D. Walton, Robert A. Blanchette, Bernard Henrissat, Francis Martin, Dan Cullen, David S. Hibbett, and Igor V. Grigoriev
Submissions from 2013
Phylogenetic and phylogenomic overview of the Polyporales., Manfred Binder, Alfredo Justo, Robert Riley, Asaf Salamov, Francesc Lopez-Giraldez, Elisabet Sjökvist, Alex Copeland, Brian Foster, Hui Sun, Ellen Larsson, Karl Henrik Larsson, Jeffrey Townsend, Igor V. Grigoriev, and David S. Hibbett
Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries, Katie R. Boissonneault, Brooks M. Henningsen, Stephen S. Bates, Deborah L. Robertson, Sean Milton, Jerry Pelletier, Deborah A. Hogan, and David E. Housman
A primer on thermodynamic-based models for deciphering transcriptional regulatory logic, Jacqueline M. Dresch, Megan Richards, and Ahmet Ay
Two-layer mathematical modeling of gene expression: Incorporating dna-level information and system dynamics, Jacqueline M. Dresch, Marc A. Thompson, David N. Arnosti, and Chichia Chiu
Lost Branches on the Tree of Life, Bryan T. Drew, Romina Gazis, Patricia Cabezas, Kristen S. Swithers, Jiabin Deng, Roseana Rodriguez, Laura A. Katz, Keith A. Crandall, David S. Hibbett, and Douglas E. Soltis
Major Events in the Evolution of Fungi, David S. Hibbett
Toward genome-enabled mycology., David S. Hibbett, Jason E. Stajich, and Joseph W. Spatafora
Fungal systematics: Is a new age of enlightenment at hand?, David S. Hibbett and John W. Taylor
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay., Chiaki Hori, Jill Gaskell, Kiyohiko Igarashi, Masahiro Samejima, David Hibbett, Bernard Henrissat, and Dan Cullen
Evolutionary Biology for the 21st Century, Jonathan B. Losos, Stevan J. Arnold, Gill Bejerano, E. D. Brodie, David Hibbett, Hopi E. Hoekstra, David P. Mindell, Antónia Monteiro, Craig Moritz, H. Allen Orr, Dmitri A. Petrov, Susanne S. Renner, Robert E. Ricklefs, Pamela S. Soltis, and Thomas L. Turner
Tail autotomy, tail size, and locomotor performance in lizards, Eric J. McElroy and Philip J. Bergmann
Phylogenetic overview of the Boletineae, Mitchell E. Nuhn, Manfred Binder, Andy F.S. Taylor, Roy E. Halling, and David S. Hibbett
A parent-of-origin effect on honeybee worker ovary size, Benjamin P. Oldroyd, Michael H. Allsopp, Katherine M. Roth, Emily J. Remnant, Robert A. Drewell, and Madeleine Beekman
A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)., Beatriz Ortiz-Santana, Daniel L. Lindner, Otto Miettinen, Alfredo Justo, and David S. Hibbett
Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes., Francisco J. Ruiz-Dueñas, Taina Lundell, Dimitrios Floudas, Laszlo G. Nagy, José M. Barrasa, David S. Hibbett, and Angel T. Martínez
Flanking sequence context-dependent transcription factor binding in early Drosophila development, Jessica L. Stringham, Adam S. Brown, Robert A. Drewell, and Jacqueline M. Dresch
Global parameter estimation for thermodynamic models of transcriptional regulation, Yerzhan Suleimenov, Ahmet Ay, Md Abul Hassan Samee, Jacqueline M. Dresch, Saurabh Sinha, and David N. Arnosti
Submissions from 2012
Diversity and distribution of marine Synechococcus: Multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean, Nathan A. Ahlgren and Gabrielle Rocap
The Evolution of Positive Allometry of Weaponry in Horned Lizards (Phrynosoma), Philip J. Bergmann and Camryn P. Berk
Vertebral evolution and the diversification of squamate reptiles, Philip J. Bergmann and Duncan J. Irschick
A two-scale mathematical model for DNA transcription, Chichia Chiu, Walid Fakhouri, Nianzheng Liu, Evan Dayringer, Jacqueline Dresch, and David Arnosti
Kin conflict in insect societies: A new epigenetic perspective, Robert A. Drewell, Nathan Lo, Peter R. Oxley, and Benjamin P. Oldroyd
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis, Elena Fernandez-Fueyo, Francisco J. Ruiz-Dueñas, Patricia Ferreira, Dimitrios Floudas, David S. Hibbett, Paulo Canessa, Luis F. Larrondo, Tim Y. James, Daniela Seelenfreund, Sergio Lobos, Rubeń Polanco, Mario Tello, Yoichi Honda, Takahito Watanabe, Takashi Watanabe, Ryu Jae San, Christian P. Kubicek, Monika Schmoll, Jill Gaskell, Kenneth E. Hammel, Franz J. St John, Amber Vanden Wymelenberg, Grzegorz Sabat, Sandra Splinter BonDurant, Khajamohiddin Syed, Jagjit S. Yadav, Harshavardhan Doddapaneni, Venkataramanan Subramanian, José L. Laviń, José A. Oguiza, Gumer Perez, and Antonio G. Pisabarro
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes, Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M. Coutinho, Ronald P. De Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Paweł Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, and David Hibbett
Spatial distribution and habitat utilization of the Zebra-tailed lizard (Callisaurus draconoides), Christopher L. Frost and Philip J. Bergmann
Molecular evolution of glutamine synthetase ii and iii in the chromalveolates, Sohini Ghoshroy and Deborah L. Robertson
Sutorius: A new genus for Boletus eximius, Roy E. Halling, Mitchell Nuhn, Nigel A. Fechner, Todd W. Osmundson, Kasem Soytong, David Arora, David S. Hibbett, and Manfred Binder
Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus, Roy E. Halling, Mitchell Nuhn, Todd Osmundson, Nigel Fechner, James M. Trappe, Kasem Soytong, David Arora, David S. Hibbett, and Manfred Binder
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche, Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Vincent Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M. Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. LaButti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A.B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, and David Hibbett
The phylogeny of selected Phylloporus species, inferred from NUC-LSU and ITS sequences, and descriptions of new species from the Old World, Maria Alice Neves, Manfred Binder, Roy Halling, David Hibbett, and Kasem Soytong
The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction, Mahajabeen Padamsee, Arun T.K. Kumar, Robert Riley, Manfred Binder, Alex Boyd, Ana M. Calvo, Kentaro Furukawa, Cedar Hesse, Stefan Hohmann, Tim Y. James, Kurt LaButti, Alla Lapidus, Erika Lindquist, Susan Lucas, Kari Miller, Sourabha Shantappa, Igor V. Grigoriev, David S. Hibbett, David J. McLaughlin, Joseph W. Spatafora, and M. Catherine Aime
Diversity and evolution of ectomycorrhizal host associations in the sclerodermatineae (Boletales, Basidiomycota), Andrew W. Wilson, Manfred Binder, and David S. Hibbett
Submissions from 2011
Aryl-homoserine lactone quorum sensing in stem-nodulating photosynthetic bradyrhizobia, Nathan A. Ahlgren, Caroline S. Harwood, Amy L. Schaefer, Eric Giraud, and E. Peter Greenberg
Transcription factor binding site redundancy in embryonic enhancers of the drosophila bithorax complex, Robert A. Drewell
The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi, Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Andrea Aerts, Fred O. Asiegbu, Scott E. Baker, Kerrie Barry, Mika Bendiksby, Melanie Blumentritt, Pedro M. Coutinho, Dan Cullen, Ronald P. De Vries, Allen Gathman, Barry Goodell, Bernard Henrissat, Katarina Ihrmark, Hävard Kauserud, Annegret Kohler, Kurt LaButti, Alla Lapidus, José L. Lavin, Yong Hwan Lee, Erika Lindquist, Walt Lilly, Susan Lucas, Emmanuelle Morin, Claude Murat, José A. Oguiza, Jongsun Park, Antonio G. Pisabarro, and David Hibbett
Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot, Ricardo Garcia-Sandoval, Zheng Wang, Manfred Binder, and David S. Hibbett
Fueling the future with fungal genomics, Igor V. Grigoriev, Daniel Cullen, Stephen B. Goodwin, David Hibbett, Thomas W. Jeffries, Christian P. Kubicek, Cheryl Kuske, Jon K. Magnuson, Francis Martin, Joseph W. Spatafora, Adrian Tsang, and Scott E. Baker
The Amsterdam Declaration on Fungal Nomenclature, David L. Hawksworth, Pedro W. Crous, Scott A. Redhead, Don R. Reynolds, Robert A. Samson, Keith A. Seifert, John W. Taylor, Michael J. Wingfield, Özlem Abaci, Catherine Aime, Ahmet Asan, Feng Yan Bai, Z. Wilhelm de Beer, Dominik Begerow, Derya Berikten, Teun Boekhout, Peter K. Buchanan, Treena Burgess, Walter Buzina, Lei Cai, Paul F. Cannon, J. Leland Crane, Ulrike Damm, Heide Marie Daniel, Anne D. van Diepeningen, Irina Druzhinina, Paul S. Dyer, Ursula Eberhardt, Jack W. Fell, Jens C. Frisvad, David M. Geiser, József Geml, and David Hibbett
Where are all the undocumented fungal species? A study of Mortierella demonstrates the need for sequence-based classification, David Hibbett and Dylan Glotzer
Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences, David S. Hibbett, Anders Ohman, Dylan Glotzer, Mitchell Nuhn, Paul Kirk, and R. Henrik Nilsson
Disruption of the Abdominal-B promoter tethering element results in a loss of long-range enhancer-directed Hox gene expression in Drosophila, Margaret C. Ho, Benjamin J. Schiller, Omar S. Akbari, Esther Bae, and Robert A. Drewell
Phylogenetic classification of trametes (basidiomycota, polyporales) based on a five-marker dataset, Alfredo Justo and David S. Hibbett
Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): Taxonomy and character evolution, Alfredo Justo, Alfredo Vizzini, Andrew M. Minnis, Nelson Menolli, Marina Capelari, Olivia Rodríguez, Ekaterina Malysheva, Marco Contu, Stefano Ghignone, and David S. Hibbett
Conservation of biotrophy in hygrophoraceae inferred from combined stable isotope and phylogenetic analyses, Brian H. Seitzman, Andrew Ouimette, Rachel L. Mixon, Erik A. Hobbie, and David S. Hibbett
Molecular dissection of cis-regulatory modules at the Drosophila bithorax complex reveals critical transcription factor signature motifs, Michael O. Starr, Margaret C.W. Ho, Eric J.M. Gunther, Yen Kuei Tu, Andrey S. Shur, Sara E. Goetz, Matthew J. Borok, Victoria Kang, and Robert A. Drewell
Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis, Andrew W. Wilson, Manfred Binder, and David S. Hibbett
Transcriptional repression by the proximal exonic region at the human TERT gene, Terence C. Wong, Ethan S. Sokol, Alicia N. Schep, Meera Punjiya, Diana A. Tran, Divina Allan, and Robert A. Drewell
Submissions from 2010
Alternate pathways of body shape evolution translate into common patterns of locomotor evolution in two clades of lizards, Philip J. Bergmann and Duncan J. Irschick
Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms, Manfred Binder, Karl Henrik Larsson, P. Brandon Matheny, and David S. Hibbett
Dissecting the regulatory switches of development: Lessons from enhancer evolution in Drosophila, Matthew J. Borok, Diana A. Tran, Margaret C.W. Ho, and Robert A. Drewell
Thermodynamic modeling of transcription: Sensitivity analysis differentiates biological mechanism from mathematical model-induced effects, Jacqueline M. Dresch, Xiaozhou Liu, David N. Arnosti, and Ahmet Ay
Deciphering a transcriptional regulatory code: Modeling short-range repression in the Drosophila embryo, Walid D. Fakhouri, Ahmet Ay, Rupinder Sayal, Jacqueline Dresch, Evan Dayringer, and David N. Arnosti
Molecular evolution of glutamine synthetase II: Phylogenetic evidence of a non-endosymbiotic gene transfer event early in plant evolution, Sohini Ghoshroy, Manfred Binder, Aurélien Tartar, and Deborah L. Robertson
Convergent evolution of sequestrate forms in Amanita under Mediterranean climate conditions, Alfredo Justo, Ingo Morgenstern, Heather E. Hallen-Adams, and David S. Hibbett
Aedes aegypti and Aedes albopictus in Bermuda: Extinction, invasion, invasion and extinction, Laran Kaplan, David Kendell, Deborah Robertson, Todd Livdahl, and Camilo Khatchikian
Characterization of three mnp genes of fomitiporia mediterranea and report of additional class ii peroxidases in the order hymenochaetales, Ingo Morgenstern, Deborah L. Robertson, and David Hibbett
Phylogenetic, structural and functional diversification of nitrate transporters in three ecologically diverse clades of mushroom-forming fungi, Jason C. Slot, Kelly N. Hallstrom, P. Brandon Matheny, Kentaro Hosaka, Gregory Mueller, Deborah L. Robertson, and David S. Hibbett
Characterization of an ultra-conserved putative cis-regulatory module at the mammalian telomerase reverse transcriptase gene, Diana A. Tran, Terence C. Wong, Alicia N. Schep, and Robert A. Drewell
Submissions from 2009
Directional evolution of stockiness coevolves with ecology and locomotion in lizards, Philip J. Bergmann, Jay J. Meyers, and Duncan J. Irschick
Unraveling the regulation of nitrogen assimilation in the marine diatom thalassiosira pseudonana (bacillariophyceae): Diurnal variations in transcript levels for five genes involved in nitrogen assimilation, Kathryn L. Brown, Katrina I. Twing, and Deborah L. Robertson
The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses, David S. Hibbett and P. Brandon Matheny
Fungal ecology catches fire, David S. Hibbett, Anders Ohman, and Paul M. Kirk
Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila, Margaret C.W. Ho, Holly Johnsen, Sara E. Goetz, Benjamin J. Schiller, Esther Bae, Diana A. Tran, Andrey S. Shur, John M. Allen, Christoph Rau, Welcome Bender, William W. Fisher, Susan E. Celniker, and Robert A. Drewell
Non-genic transcription at the Drosophila bithorax complex - Functional activity of the dark matter of the genome, Margaret C.W. Ho, Benjamin J. Schiller, Sara E. Goetz, and Robert A. Drewell
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion, Diego Martinez, Jean Challacombe, Ingo Morgenstern, David Hibbett, Monika Schmoll, Christian P. Kubicek, Patricia Ferreira, Francisco J. Ruiz-Duenas, Angel T. Martinez, Phil Kersten, Kenneth E. Hammel, Amber Vanden Wymelenberg, Jill Gaskell, Erika Lindquist, Grzegorz Sabat, Sandra Splinter BonDurant, Luis F. Larrondo, Paulo Canessa, Rafael Vicuna, Jagjit Yadav, Harshavardhan Doddapaneni, Venkataramanan Subramanian, Antonio G. Pisabarro, José L. Lavín, José A. Oguiza, Emma Master, Bernard Henrissat, Pedro M. Coutinho, Paul Harris, Jon Karl Magnuson, Scott E. Baker, and Kenneth Bruno
Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae, P. Brandon Matheny, M. Catherine Aime, Neale L. Bougher, Bart Buyck, Dennis E. Desjardin, Egon Horak, Bradley R. Kropp, D. Jean Lodge, Kasem Soytong, James M. Trappe, and David S. Hibbett
The search for the fungal tree of life, David J. McLaughlin, David S. Hibbett, François Lutzoni, Joseph W. Spatafora, and Rytas Vilgalys
Submissions from 2008
A novel promoter-tethering element regulates enhancer-driven gene expression at the bithorax complex in the Drosophila embryo, Omar S. Akbari, Esther Bae, Holly Johnsen, Alfred Villaluz, Debbie Wong, and Robert A. Drewell
The Abdominal-B promoter tethering element mediates promoter-enhancer specificity at the Drosophila bithorax complex, Omar S. Akbari, Ben J. Schiller, Sara E. Goetz, Margaret C.W. Ho, Esther Bae, and Robert A. Drewell
Hydrophobins Sc3 and Sc4 gene expression in mounds, fruiting bodies and vegetative hyphae of Schizophyllum commune, Goutami Banerjee, Deborah L. Robertson, and Thomas J. Leonard
