Clark University Digital Commons I Faculty Works I Biology | Faculty Works by Department and/or School | Clark University

Biology

 

Our faculty are interested in a wide range of organisms and research areas. They have received funding from the John Templeton Foundation, the National Institutes of Health, the National Science Foundation, and other prestigious funding agencies and foundations.

Areas of Research include:

  • Animal behavior
  • Bioinformatics
  • Cell biology
  • Development
  • Ecology
  • Evolution
  • Genetics
  • Marine biology
  • Molecular biology
  • Molecular evolution/systematics
  • Neuroscience
  • Physiology
  • Population biology
  • Signal Transduction

Follow

Submissions from 2017

PDF

Mycophagous rove beetles highlight diverse mushrooms in the Cretaceous, Chenyang Cai, Richard A.B. Leschen, David S. Hibbett, Fangyuan Xia, and Diying Huang

Link

Decoupling brain from nerve cord development in the annelid Capitella teleta: Insights into the evolution of nervous systems, Allan M. Carrillo-Baltodano and Néva P. Meyer

PDF

The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies, Abdulkadir Elmas, Xiaodong Wang, and Jacqueline M. Dresch

PDF

Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12, Jill Gaskell, Phil Kersten, Luis F. Larrondo, Paulo Canessa, Diego Martinez, David Hibbett, Monika Schmoll, Christian P. Kubicek, Angel T. Martinez, Jagjit Yadav, Emma Master, Jon Karl Magnuson, Debbie Yaver, Randy Berka, Kathleen Lail, Cindy Chen, Kurt LaButti, Matt Nolan, Anna Lipzen, Andrea Aerts, Robert Riley, Kerrie Barry, Bernard Henrissat, Robert Blanchette, Igor V. Grigoriev, and Dan Cullen

Link

A revised family-level classification of the Polyporales (Basidiomycota), Alfredo Justo, Otto Miettinen, Dimitrios Floudas, Beatriz Ortiz-Santana, Elisabet Sjökvist, Daniel Lindner, Karen Nakasone, Tuomo Niemelä, Karl Henrik Larsson, Leif Ryvarden, and David S. Hibbett

Link

Convergent body shapes have evolved via deterministic and historically contingent pathways in Lerista lizards, Gen Morinaga and Philip J. Bergmann

Link

Genetic bases of fungal white rot wood decay predicted by phylogenomic analysis of correlated gene-phenotype evolution, Laszlo G. Nagy, Robert Riley, Philip J. Bergmann, Krisztina Krizsan, Francis M. Martin, Igor V. Grigoriev, Dan Cullen, and David Hibbett

PDF

Do the shuffle: Changes in Symbiodinium consortia throughout juvenile coral development, Hannah G. Reich, Deborah L. Robertson, and Gretchen Goodbody-Gringley

PDF

From ground pools to treeholes: Convergent evolution of habitat and phenotype in Aedes mosquitoes, John Soghigian, Theodore G. Andreadis, and Todd P. Livdahl

PDF

Differential response to mosquito host sex and parasite dosage suggest mixed dispersal strategies in the parasite Ascogregarina taiwanensis, John Soghigian and Todd Livdahl

PDF

A parasite's modification of host behavior reduces predation on its host, John Soghigian, Linda R. Valsdottir, and Todd P. Livdahl

PDF

Spatiotemporal regulation of nervous system development in the annelid Capitella teleta, Abhinav Sur, Craig R. Magie, Elaine C. Seaver, and Néva P. Meyer

Submissions from 2016

PDF

Src1 is a protein of the inner nuclear membrane interacting with the Dictyostelium lamin NE81, Petros Batsios, Xiang Ren, Otto Baumann, Denis A. Larochelle, and Ralph Gräf

PDF

Nucleotide interdependency in transcription factor binding sites in the drosophila genome, Jacqueline M. Dresch, Rowan G. Zellers, Daniel K. Bork, and Robert A. Drewell

Link

The genome of Xylona heveae provides a window into fungal endophytism, Romina Gazis, Alan Kuo, Robert Riley, Kurt LaButti, Anna Lipzen, Junyan Lin, Mojgan Amirebrahimi, Cedar N. Hesse, Joseph W. Spatafora, Bernard Henrissat, Matthieu Hainaut, Igor V. Grigoriev, and David S. Hibbett

Link

The invisible dimension of fungal diversity, David Hibbett

Link

Sequence-based classification and identification of Fungi, David Hibbett, Kessy Abarenkov, Urmas Kõljalg, Maarja Öpik, Benli Chai, James Cole, Qiong Wang, Pedro Crous, Vincent Robert, Thorunn Helgason, Joshua R. Herr, Paul Kirk, Shiloh Lueschow, Kerry O’Donnell, R. Henrik Nilsson, Ryoko Oono, Conrad Schoch, Christopher Smyth, Donald M. Walker, Andrea Porras-Alfaro, John W. Taylor, and David M. Geiser

Link

Climate, decay, and the death of the coal forests, David Hibbett, Robert Blanchette, Paul Kenrick, and Benjamin Mills

PDF

Design for mosquito abundance, diversity, and phenology sampling within the National Ecological Observatory Network, D. Hoekman, Y. P. Springer, C. M. Barker, R. Barrera, M. S. Blackmore, W. E. Bradshaw, D. H. Foley, H. S. Ginsberg, M. H. Hayden, C. M. Holzapfel, S. A. Juliano, L. D. Kramer, S. L. LaDeau, Todd P. Livdahl, C. G. Moore, R. S. Nasci, W. K. Reisen, and H. M. Savage

Link

Unearthing the roots of ectomycorrhizal symbioses, Francis Martin, Annegret Kohler, Claude Murat, Claire Veneault-Fourrey, and David S. Hibbett

PDF

Draft genome sequence of the white-rot fungus Obba rivulosa 3A-2, Otto Miettinen, Robert Riley, Kerrie Barry, Dan Cullen, Ronald P. de Vries, Matthieu Hainaut, Annele Hatakka, Bernard Henrissat, Kristiina Hildén, Rita Kuo, Kurt LaButti, Anna Lipzen, Miia R. Mäkelä, Laura Sandor, Joseph W. Spatafora, Igor V. Grigoriev, and David S. Hibbett

PDF

Polypores and genus concepts in Phanerochaetaceae (Polyporales, Basidiomycota), Otto Miettinen, Viacheslav Spirin, Josef Vlasák, Bernard Rivoire, Soili Stenroos, and David S. Hibbett

Link

Thermal and moisture habitat preferences do not maximize jumping performance in frogs, Allegra Mitchell and Philip J. Bergmann

Link

Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities, László G. Nagy, Robert Riley, Andrew Tritt, Catherine Adam, Chris Daum, Dimitrios Floudas, Hui Sun, Jagjit S. Yadav, Jasmyn Pangilinan, Karl Henrik Larsson, Kenji Matsuura, Kerrie Barry, Kurt Labutti, Rita Kuo, Robin A. Ohm, Sukanta S. Bhattacharya, Takashi Shirouzu, Yuko Yoshinaga, Francis M. Martin, Igor V. Grigoriev, and David S. Hibbett

Link

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks, Kade P. Pettie, Jacqueline M. Dresch, and Robert A. Drewell

PDF

Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation, Emily J. Remnant, Alyson Ashe, Paul E. Young, Gabriele Buchmann, Madeleine Beekman, Michael H. Allsopp, Catherine M. Suter, Robert A. Drewell, and Benjamin P. Oldroyd

File

Supplemental material for Reich 2016, Deborah Robertson, Hannah G. Reich, and Gretchen Goodbody-Gringley

PDF

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo, Rupinder Sayal, Jacqueline M. Dresch, Irina Pushel, Benjamin R. Taylor, and David N. Arnosti

PDF

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors, Firoz Shah, César Nicolás, Johan Bentzer, Magnus Ellström, Mark Smits, Francois Rineau, Björn Canbäck, Dimitrios Floudas, Robert Carleer, Gerald Lackner, Jana Braesel, Dirk Hoffmeister, Bernard Henrissat, Dag Ahrén, Tomas Johansson, David S. Hibbett, Francis Martin, Per Persson, and Anders Tunlid

PDF

Tick-, mosquito-, and rodent-borne parasite sampling designs for the National Ecological Observatory Network, Yuri P. Springer, David Hoekman, Pieter T.J. Johnson, Paul A. Duffy, Rebecca A. Hufft, David T. Barnett, Brian F. Allan, Brian R. Amman, Christopher M. Barker, Roberto Barrera, Charles B. Beard, Lorenza Beati, Mike Begon, Mark S. Blackmore, William E. Bradshaw, Dustin Brisson, Charles H. Calisher, James E. Childs, Maria A. Diuk-Wasser, Richard J. Douglass, Rebecca J. Eisen, Desmond H. Foley, Janet E. Foley, Holly D. Gaff, Scott L. Gardner, Howard S. Ginsberg, Gregory E. Glass, Sarah A. Hamer, Mary H. Hayden, Brian Hjelle, Christina M. Holzapfel, Steven A. Juliano, and Todd P. Livdahl

Submissions from 2015

Link

Hindlimb muscle anatomical mechanical advantage differs among joints and stride phases in basilisk lizards, Philip J. Bergmann and Meredith Hare-Drubka

Link

The Wisdom of Crowds: Can Mathematical Models Crack the cis Regulatory Code?, Jacqueline M. Dresch and David N. Arnosti

Link

Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii, Dimitrios Floudas, Benjamin W. Held, Robert Riley, Laszlo G. Nagy, Gage Koehler, Anthony S. Ransdell, Hina Younus, Julianna Chow, Jennifer Chiniquy, Anna Lipzen, Andrew Tritt, Hui Sun, Sajeet Haridas, Kurt LaButti, Robin A. Ohm, Ursula Kües, Robert A. Blanchette, Igor V. Grigoriev, Robert E. Minto, and David S. Hibbett

Link

Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling, Dimitrios Floudas and David S. Hibbett

Link

Molecular Evolution of Nitrogen Assimilatory Enzymes in Marine Prasinophytes, Sohini Ghoshroy and Deborah L. Robertson

Link

Evolutionary relationships of Heimioporus and Boletellus (Boletales), with an emphasis on Australian taxa including new species and new combinations in Aureoboletus, Hemileccinum and Xerocomus, Roy E. Halling, Nigel Fechner, Mitchell Nuhn, Todd Osmundson, Kasem Soytong, David Arora, Manfred Binder, and David Hibbett

Link

Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms, Joshua R. Herr, Maarja Öpik, and David S. Hibbett

Link

Synthesis of phylogeny and taxonomy into a comprehensive tree of life, Cody E. Hinchliff, Stephen A. Smith, James F. Allman, J. Gordon Burleigh, Ruchi Chaudhary, Lyndon M. Coghill, Keith A. Crandall, Jiabin Deng, Bryan T. Drew, Romina Gazis, Karl Gude, David S. Hibbett, Laura A. Katz, H. Dail Laughinghouse, Emily Jane McTavish, Peter E. Midford, Christopher L. Owen, Richard H. Ree, Jonathan A. Rees, Douglas E. Soltisc, Tiffani Williams, and Karen A. Cranston

PDF

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists, Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, Francois Buscot, Björn Canbäck, Cindy Choi, Nicolas Cichocki, Alicia Clum, Jan Colpaert, Alex Copeland, Mauricio D. Costa, Jeanne Doré, Dimitrios Floudas, Gilles Gay, Mariangela Girlanda, Bernard Henrissat, Sylvie Herrmann, Jaqueline Hess, Nils Högberg, Tomas Johansson, Hassine Radhouane Khouja, Kurt Labutti, Urs Lahrmann, Anthony Levasseur, Erika A. Lindquist, Anna Lipzen, Roland Marmeisse, Elena Martino, Claude Murat, Chew Y. Ngan, and David Hibbett

Link

Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea, Rachael Martin, Romina Gazis, Demetra Skaltsas, Priscila Chaverri, and David Hibbett

PDF

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos, Gregory D. McCarthy, Robert A. Drewell, and Jacqueline M. Dresch

PDF

Nervous system development in lecithotrophic larval and juvenile stages of the annelid Capitella teleta, Néva P. Meyer, Allan Carrillo-Baltodano, Richard E. Moore, and Elaine C. Seaver

Link

Phylogenetic relationships and morphological evolution in Lentinus, Polyporellus and Neofavolus, emphasizing southeastern Asian taxa, Jaya Seelan Sathiya Seelan, Alfredo Justo, Laszlo G. Nagy, Edward A. Grand, Scott A. Redhead, and David Hibbett

PDF

Degradation of bunker C fuel oil by white-rot fungi in sawdust cultures suggests potential applications in bioremediation, Darcy Young, James Rice, Rachael Martin, Erika Lindquist, Anna Lipzen, Igor Grigoriev, and David Hibbett

PDF

MARZ: An algorithm to combinatorially analyze gapped n-mer models of transcription factor binding, Rowan G. Zellers, Robert A. Drewell, and Jacqueline M. Dresch

Submissions from 2014

Link

Many-to-Many Mapping of Phenotype to Performance: An Extension of the F-Matrix for Studying Functional Complexity, Philip J. Bergmann and Eric J. McElroy

Link

Species delimitation in Trametes: A comparison of ITS, RPB1, RPB2 and TEF1 gene phylogenies, Alexis Carlson, Alfredo Justo, and David S. Hibbett

Link

Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species, Alfredo Justo, Ekaterina Malysheva, Tatiana Bulyonkova, Else C. Vellinga, Gerry Cobian, Nhu Nguyen, Andrew M. Minnis, and David S. Hibbett

Link

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts, László G. Nagy, Robin A. Ohm, Gábor M. Kovács, Dimitrios Floudas, Robert Riley, Attila Gácser, Mátyás Sipiczki, John M. Davis, Sharon L. Doty, G. Sybren De Hoog, B. Franz Lang, Joseph W. Spatafora, Francis M. Martin, Igor V. Grigoriev, and David S. Hibbett

Link

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi, Robert Riley, Asaf A. Salamov, Daren W. Brown, Laszlo G. Nagy, Dimitrios Floudas, Benjamin W. Held, Anthony Levasseur, Vincent Lombard, Emmanuelle Morin, Robert Otillar, Erika A. Lindquist, Hui Sun, Kurt M. LaButti, Jeremy Schmutz, Dina Jabbour, Hong Luo, Scott E. Baker, Antonio G. Pisabarro, Jonathan D. Walton, Robert A. Blanchette, Bernard Henrissat, Francis Martin, Dan Cullen, David S. Hibbett, and Igor V. Grigoriev

PDF

Sexual Harassment and Feeding Inhibition between two Invasive Dengue Vectors, John Soghigian, Kathryn Gibbs, Ashleigh Stanton, Rachel Kaiser, and Todd Livdahl

Submissions from 2013

Link

Phylogenetic and phylogenomic overview of the Polyporales., Manfred Binder, Alfredo Justo, Robert Riley, Asaf Salamov, Francesc Lopez-Giraldez, Elisabet Sjökvist, Alex Copeland, Brian Foster, Hui Sun, Ellen Larsson, Karl Henrik Larsson, Jeffrey Townsend, Igor V. Grigoriev, and David S. Hibbett

PDF

Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries, Katie R. Boissonneault, Brooks M. Henningsen, Stephen S. Bates, Deborah L. Robertson, Sean Milton, Jerry Pelletier, Deborah A. Hogan, and David E. Housman

PDF

Lost Branches on the Tree of Life, Bryan T. Drew, Romina Gazis, Patricia Cabezas, Kristen S. Swithers, Jiabin Deng, Roseana Rodriguez, Laura A. Katz, Keith A. Crandall, David S. Hibbett, and Douglas E. Soltis

Link

Major Events in the Evolution of Fungi, David S. Hibbett

Link

Toward genome-enabled mycology., David S. Hibbett, Jason E. Stajich, and Joseph W. Spatafora

Link

Fungal systematics: Is a new age of enlightenment at hand?, David S. Hibbett and John W. Taylor

Link

Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay., Chiaki Hori, Jill Gaskell, Kiyohiko Igarashi, Masahiro Samejima, David Hibbett, Bernard Henrissat, and Dan Cullen

PDF

Evolutionary Biology for the 21st Century, Jonathan B. Losos, Stevan J. Arnold, Gill Bejerano, E. D. Brodie, David Hibbett, Hopi E. Hoekstra, David P. Mindell, Antónia Monteiro, Craig Moritz, H. Allen Orr, Dmitri A. Petrov, Susanne S. Renner, Robert E. Ricklefs, Pamela S. Soltis, and Thomas L. Turner

Link

Tail autotomy, tail size, and locomotor performance in lizards, Eric J. McElroy and Philip J. Bergmann

Link

Phylogenetic overview of the Boletineae, Mitchell E. Nuhn, Manfred Binder, Andy F.S. Taylor, Roy E. Halling, and David S. Hibbett

Link

A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)., Beatriz Ortiz-Santana, Daniel L. Lindner, Otto Miettinen, Alfredo Justo, and David S. Hibbett

Link

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes., Francisco J. Ruiz-Dueñas, Taina Lundell, Dimitrios Floudas, Laszlo G. Nagy, José M. Barrasa, David S. Hibbett, and Angel T. Martínez

Submissions from 2012

Link

Life cycle completion of parasite Ascogregarina taiwanensis (Apicomplexa: Lecudinidae) in non-native host Ochlerotatus japonicus (Diptera: Culicidae), J. A. Erthal, J. S. Soghigian, and T. Livdahl

Link

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis, Elena Fernandez-Fueyo, Francisco J. Ruiz-Dueñas, Patricia Ferreira, Dimitrios Floudas, David S. Hibbett, Paulo Canessa, Luis F. Larrondo, Tim Y. James, Daniela Seelenfreund, Sergio Lobos, Rubeń Polanco, Mario Tello, Yoichi Honda, Takahito Watanabe, Takashi Watanabe, Ryu Jae San, Christian P. Kubicek, Monika Schmoll, Jill Gaskell, Kenneth E. Hammel, Franz J. St John, Amber Vanden Wymelenberg, Grzegorz Sabat, Sandra Splinter BonDurant, Khajamohiddin Syed, Jagjit S. Yadav, Harshavardhan Doddapaneni, Venkataramanan Subramanian, José L. Laviń, José A. Oguiza, Gumer Perez, and Antonio G. Pisabarro

Link

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes, Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M. Coutinho, Ronald P. De Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Paweł Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, and David Hibbett

Link

Molecular evolution of glutamine synthetase ii and iii in the chromalveolates, Sohini Ghoshroy and Deborah L. Robertson

Link

Sutorius: A new genus for Boletus eximius, Roy E. Halling, Mitchell Nuhn, Nigel A. Fechner, Todd W. Osmundson, Kasem Soytong, David Arora, David S. Hibbett, and Manfred Binder

Link

Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus, Roy E. Halling, Mitchell Nuhn, Todd Osmundson, Nigel Fechner, James M. Trappe, Kasem Soytong, David Arora, David S. Hibbett, and Manfred Binder

Link

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche, Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Vincent Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M. Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. LaButti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A.B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, and David Hibbett

Link

The phylogeny of selected Phylloporus species, inferred from NUC-LSU and ITS sequences, and descriptions of new species from the Old World, Maria Alice Neves, Manfred Binder, Roy Halling, David Hibbett, and Kasem Soytong

PDF

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction, Mahajabeen Padamsee, Arun T.K. Kumar, Robert Riley, Manfred Binder, Alex Boyd, Ana M. Calvo, Kentaro Furukawa, Cedar Hesse, Stefan Hohmann, Tim Y. James, Kurt LaButti, Alla Lapidus, Erika Lindquist, Susan Lucas, Kari Miller, Sourabha Shantappa, Igor V. Grigoriev, David S. Hibbett, David J. McLaughlin, Joseph W. Spatafora, and M. Catherine Aime

PDF

Expression of the pair-rule gene homologs runt, Pax3/7, even-skipped-1 and even-skipped-2 during larval and juvenile development of the polychaete annelid Capitella teleta does not support a role in segmentation, Elaine C. Seaver, Emi Yamaguchi, Gemma S. Richards, and Néva P. Meyer

Diversity and evolution of ectomycorrhizal host associations in the sclerodermatineae (Boletales, Basidiomycota), Andrew W. Wilson, Manfred Binder, and David S. Hibbett

Submissions from 2011

Link

The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi, Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Andrea Aerts, Fred O. Asiegbu, Scott E. Baker, Kerrie Barry, Mika Bendiksby, Melanie Blumentritt, Pedro M. Coutinho, Dan Cullen, Ronald P. De Vries, Allen Gathman, Barry Goodell, Bernard Henrissat, Katarina Ihrmark, Hävard Kauserud, Annegret Kohler, Kurt LaButti, Alla Lapidus, José L. Lavin, Yong Hwan Lee, Erika Lindquist, Walt Lilly, Susan Lucas, Emmanuelle Morin, Claude Murat, José A. Oguiza, Jongsun Park, Antonio G. Pisabarro, and David Hibbett

Link

Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot, Ricardo Garcia-Sandoval, Zheng Wang, Manfred Binder, and David S. Hibbett

Link

Fueling the future with fungal genomics, Igor V. Grigoriev, Daniel Cullen, Stephen B. Goodwin, David Hibbett, Thomas W. Jeffries, Christian P. Kubicek, Cheryl Kuske, Jon K. Magnuson, Francis Martin, Joseph W. Spatafora, Adrian Tsang, and Scott E. Baker

PDF

The Amsterdam Declaration on Fungal Nomenclature, David L. Hawksworth, Pedro W. Crous, Scott A. Redhead, Don R. Reynolds, Robert A. Samson, Keith A. Seifert, John W. Taylor, Michael J. Wingfield, Özlem Abaci, Catherine Aime, Ahmet Asan, Feng Yan Bai, Z. Wilhelm de Beer, Dominik Begerow, Derya Berikten, Teun Boekhout, Peter K. Buchanan, Treena Burgess, Walter Buzina, Lei Cai, Paul F. Cannon, J. Leland Crane, Ulrike Damm, Heide Marie Daniel, Anne D. van Diepeningen, Irina Druzhinina, Paul S. Dyer, Ursula Eberhardt, Jack W. Fell, Jens C. Frisvad, David M. Geiser, József Geml, and David Hibbett

Link

Where are all the undocumented fungal species? A study of Mortierella demonstrates the need for sequence-based classification, David Hibbett and Dylan Glotzer

Link

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences, David S. Hibbett, Anders Ohman, Dylan Glotzer, Mitchell Nuhn, Paul Kirk, and R. Henrik Nilsson

Link

Phylogenetic classification of trametes (basidiomycota, polyporales) based on a five-marker dataset, Alfredo Justo and David S. Hibbett

Link

Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): Taxonomy and character evolution, Alfredo Justo, Alfredo Vizzini, Andrew M. Minnis, Nelson Menolli, Marina Capelari, Olivia Rodríguez, Ekaterina Malysheva, Marco Contu, Stefano Ghignone, and David S. Hibbett

PDF

Insulin receptor-mediated signaling via phospholipase C-γ regulates growth and differentiation in drosophila, Juan M. Murillo-Maldonado, Fouad Bou Zeineddine, Rachel Stock, Justin Thackeray, and Juan R. Riesgo-Escovar

Link

Conservation of biotrophy in hygrophoraceae inferred from combined stable isotope and phylogenetic analyses, Brian H. Seitzman, Andrew Ouimette, Rachel L. Mixon, Erik A. Hobbie, and David S. Hibbett

Link

Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis, Andrew W. Wilson, Manfred Binder, and David S. Hibbett

Submissions from 2010

Link

Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms, Manfred Binder, Karl Henrik Larsson, P. Brandon Matheny, and David S. Hibbett

Link

Estimating the per capita rate of population change: How well do life-history surrogates perform?, M. W. Chmielewski, C. Khatchikian, and T. Livdahl

PDF

Molecular evolution of glutamine synthetase II: Phylogenetic evidence of a non-endosymbiotic gene transfer event early in plant evolution, Sohini Ghoshroy, Manfred Binder, Aurélien Tartar, and Deborah L. Robertson

Link

Convergent evolution of sequestrate forms in Amanita under Mediterranean climate conditions, Alfredo Justo, Ingo Morgenstern, Heather E. Hallen-Adams, and David S. Hibbett

Link

Aedes aegypti and Aedes albopictus in Bermuda: Extinction, invasion, invasion and extinction, Laran Kaplan, David Kendell, Deborah Robertson, Todd Livdahl, and Camilo Khatchikian

Link

Environmental effects on bet hedging in Aedes mosquito egg hatch, Camilo E. Khatchikian, John J. Dennehy, Christopher J. Vitek, and Todd P. Livdahl

Link

Dictyostelium centrin B localization during cell cycle progression, Sebastian Mana-Capelli, Ralph Gräf, and Denis A. Larochelle

Link

Characterization of three mnp genes of fomitiporia mediterranea and report of additional class ii peroxidases in the order hymenochaetales, Ingo Morgenstern, Deborah L. Robertson, and David Hibbett

Link

Phylogenetic, structural and functional diversification of nitrate transporters in three ecologically diverse clades of mushroom-forming fungi, Jason C. Slot, Kelly N. Hallstrom, P. Brandon Matheny, Kentaro Hosaka, Gregory Mueller, Deborah L. Robertson, and David S. Hibbett

Submissions from 2009

Link

Unraveling the regulation of nitrogen assimilation in the marine diatom thalassiosira pseudonana (bacillariophyceae): Diurnal variations in transcript levels for five genes involved in nitrogen assimilation, Kathryn L. Brown, Katrina I. Twing, and Deborah L. Robertson

PDF

The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses, David S. Hibbett and P. Brandon Matheny

Link

Fungal ecology catches fire, David S. Hibbett, Anders Ohman, and Paul M. Kirk

Link

Climate and geographic trends in hatch delay of the treehole mosquito, Aedes triseriatus Say (Diptera: Culicidae), Camilo E. Khatchikian, John J. Dennehy, Christopher J. Vitek, and Todd Livdahl

Link

Dictyostelium discoideum CenB is a bona fide centrin essential for nuclear architecture and centrosome stability, Sebastian Mana-Capelli, Ralph Gräf, and Denis A. Larochelle

Link

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion, Diego Martinez, Jean Challacombe, Ingo Morgenstern, David Hibbett, Monika Schmoll, Christian P. Kubicek, Patricia Ferreira, Francisco J. Ruiz-Duenas, Angel T. Martinez, Phil Kersten, Kenneth E. Hammel, Amber Vanden Wymelenberg, Jill Gaskell, Erika Lindquist, Grzegorz Sabat, Sandra Splinter BonDurant, Luis F. Larrondo, Paulo Canessa, Rafael Vicuna, Jagjit Yadav, Harshavardhan Doddapaneni, Venkataramanan Subramanian, Antonio G. Pisabarro, José L. Lavín, José A. Oguiza, Emma Master, Bernard Henrissat, Pedro M. Coutinho, Paul Harris, Jon Karl Magnuson, Scott E. Baker, and Kenneth Bruno