Biology

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Authors

Dimitrios Floudas, Clark University
Manfred Binder, Clark University
Robert Riley, U.S. Department of Energy Joint Genome Institute
Kerrie Barry, U.S. Department of Energy Joint Genome Institute
Robert A. Blanchette, University of Minnesota Twin Cities
Bernard Henrissat, Aix Marseille Université
Angel T. Martínez, CSIC - Centro de Investigaciones Biológicas Margarita Salas (CIB)
Robert Otillar, U.S. Department of Energy Joint Genome Institute
Joseph W. Spatafora, Oregon State University
Jagjit S. Yadav, University of Cincinnati College of Medicine
Andrea Aerts, U.S. Department of Energy Joint Genome Institute
Isabelle Benoit, Universiteit Utrecht
Alex Boyd, Oregon State University
Alexis Carlson, Clark University
Alex Copeland, U.S. Department of Energy Joint Genome Institute
Pedro M. Coutinho, Aix Marseille Université
Ronald P. De Vries, Universiteit Utrecht
Patricia Ferreira, Universidad de Zaragoza
Keisha Findley, Duke University Medical Center
Brian Foster, U.S. Department of Energy Joint Genome Institute
Jill Gaskell, USDA Forest Products Laboratory
Dylan Glotzer, Clark University
Paweł Górecki, University of Warsaw, Institute of Informatics
Joseph Heitman, Duke University Medical Center
Cedar Hesse, Oregon State University
Chiaki Hori, Graduate School of Agricultural and Life Sciences The University of Tokyo
Kiyohiko Igarashi, Graduate School of Agricultural and Life Sciences The University of Tokyo
Joel A. Jurgens, University of Minnesota Twin Cities
Nathan Kallen, Clark University
Phil Kersten, USDA Forest Products Laboratory
Annegret Kohler, Interactions Arbres/Micro-Organismes (IaM)
Ursula Kües, Georg-August-Universität Göttingen
David Hibbett, Clark UniversityFollow

Document Type

Article

Abstract

Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non-lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal genomes (12 generated for this study) suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species. Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period.

Publication Title

Science

Publication Date

6-29-2012

Volume

336

Issue

6089

First Page

1715

Last Page

1719

ISSN

0036-8075

DOI

10.1126/science.1221748

Keywords

wood, fungi, molecular clock

Cross Post Location

Student Publications

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